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Author(s)

Kedra Ousmael

Title

IGN_FGD_OCT2023_FP259-266_NF

Description

Raw sequencing reads, Low copy de novo assemblies and SNPs for paper - Identification and high-throughput genotyping of single nucleotide polymorphism markers in a non-model conifer (Abies nordmanniana (Steven) Spach) 

Data explanation:

*fastq.gz: paired end reads of four individuals: individuals 9 and 12 from the Borshomi gene pool (FP259), and individuals 13 and 15 from the Ambrolauri gene pool (FP266). Haploid megagametophytes from seed were used as a source of DNA.
Mas_assembly.fa: assembly generated by MaSuRCA in a FASTA format
mas_alba.vcf: SNPs identified in common between the de novo assembly and Abies alba draft genome as references in VCF format. 
mas_ebwt.vcf: SNPs identified between the Mas_assembly based approach and reference_free approach by Ebwt2InDel
The contig names in the VCF files are from A. alba draft reference genome available from https://treegenesdb.org/FTP/Genomes/Abal/.