Archive Meta Data

Author(s)

Richard Michael, Jacob Kæstel-Hansen, Peter Mørch Groth, Simon Bartels, Jesper Salomon, Pengfei Tian, Nikos S. Hatzakis, Wouter Boomsma

Title

ProteinRegressionArchive

Description

This directory contains all data required to run the experiments of the "Protein Regression Assessment"
and replicate the presented figures.

The original data-sets (alignments, protein sequences, and experimental observations) is a subset of data contained in the ProteinGym, 
see 

Notin, Pascal, et al. "Tranception: protein fitness prediction with autoregressive transformers and inference-time retrieval." International Conference on Machine Learning. PMLR, 2022.

and 

Notin, Pascal, et al. "Proteingym: Large-scale benchmarks for protein fitness prediction and design." Thirty-seventh Conference on Neural Information Processing Systems Datasets and Benchmarks Track. 2023.